PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016478209.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 437aa    MW: 48798.2 Da    PI: 6.8687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016478209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37e-07193214223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_016478209.1 193 FCTICGKGFKRDANLRMHMRGH 214
                     6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-5190217No hitNo description
SMARTSM003550.0026192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03192219IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5193240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SMARTSM00355250242275IPR015880Zinc finger, C2H2-like
SMARTSM0035533280302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEQQVNQRSE NHDFTRRQDW DPKAMLNNMS FLEQKIHQLQ ELVRIIVDHR SLAGIQGNDL  60
SIQQQQLIIA DLTSIIVQLI STAGSLLPTV KHHTLSSASP TTKQPAQFGG VWVPSGKVID  120
AGALPHSVNV TKAEDQPNHV DLMGDCGIVQ KYDVDEHEAK DEDEFHDEEN LPPGSYEILQ  180
LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT PAALAKPHKD PSSGTMTLIK  240
RYSCPCVGCK RNKEHKRFQP LKTILCVKNH YKRTHCEKSY ACSRCNLKKF SVIADLRTHE  300
KHCGIDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAIPLDE TKGFAGTSDQ GQIGKATTEA  360
GEIGFELNVQ NGSGLQTTIN VKEDADNPGS YLSPLNIETC KLSELQEFPQ PPFEDPENSF  420
SFLLSGSCNY PQRAGKI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016478209.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N51e-167STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLM1CGN80.0M1CGN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000670910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47542441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-161C2H2 family protein